Species Distribution Modeling Using Remote Sensing


In this research, species distribution modeling is used as a tool to understand the environmental determinants that control the distribution of species and to obtain spatial patterns on the species' distribution. Current projects include evaluating the usefulness of newly available vegetation remote sensing data (e.g., from NASA's Moderate Imaging Spectroradiometer [MODIS]) in species distributional modeling, understanding the spatial distribution of tree diversity in the Amazon basin, predicting present-day, future, and past distribution of biomes and vertebrates in the diverse Tropical Andes, predicting invasions of savanna reptiles into fragmented rainforests in Cameroon, and modeling the geographic distribution of avian malaria blood parasites throughout African rainforests. In species distributional modeling, also called “bioclimatic envelope modeling,” empirical relationships between observed species distributions and environmental variables are established and, thereafter, projected onto geographic space.

A relatively new research venue involves explaining and predicting genetic and morphological diversity over a landscape using environmental correlates. Species distribution modeling is used as a first step, and statistical relationships between phylogeographic and environmental patterns are determined and projected over the regions where the species of interest is predicted to reside. The results from this project will not only increase our fundamental understanding of evolutionary processes in a spatial context but will also enable decision makers to use this information in developing conservation strategies.

Many of these projects are carried out with NASA-funded grants to the Center for Tropical Research and in collaboration with scientists from NASA’s Jet Propulsion Laboratory.

Some examples of these projects are given below.


Figure 1: Potential geographic distribution of tree diversity in the Amazon basin. Left panel: Previous map of interpolated tree diversity based on sample locations throughout the Amazon basin (white circles; see ter Steege et al. 2006). Circle size corresponds to magnitude of Fisher alpha, a common measure of local diversity. Right panel: Spatial predictions of tree diversity produced with the Maxent algorithm, observed sample occurrences of Fisher alpha and optical and microwave remote sensing data. The Maxent distribution provides much more spatial detail. Regions of extreme high tree diversity are largely located in the western part of the Amazon basin, whereas regions of relatively low tree diversity are mainly found in the southern margin of the Amazon basin.

Figure 2: Impact of climate change on the geographic distribution of hummingbirds in the Northern Andes. Panel A: Present potential geographic distribution of the green-fronted lancebill (Doryfera ludoviceae) based on sample locations, observed climate data, and generated through the use of the Maxent algorithm. Panel B: Change map of future minus present-day distribution. The present-day climate-species relationship was projected only on the future temperature change, obtained from a climate model (CCM3) under a double CO2 scenario. Panel C: Similar to Panel B, but in this case the present-day relationship was projected on the total climate change (including changes in precipitation). The change panels document the general tendency of a distributional shift of the hummingbird habitat towards higher elevations as a response to warming.

Figure 3: Predicting savanna snake invasion in Cameroon’s rainforest zone. Left panel: Map of ecoregions in Cameroon. Right panel: Potential geographic distribution of the night adder (Causus maculatus), produced through the Maxent algorithm, observed sample locations, and climate and remote sensing data. Predictions of invasion areas in the rainforest zone along major roadways and near urban centers (see inset) are consistent with our hypothesis that human removal of rainforest vegetation facilitates invasion through creation of savanna-like microhabitats.

Related Publications

2014 Fuller TL, Havers F, Xu C, Fang L, Cao W, Shu Y, Widdowson M, Smith TB. Identifying areas with a high risk of human infection with the avian influenza (H7N9) virus in East Asia. Journal of Infection 69:174-181. doi:10.1016/j.jinf.2014.03.006
2013 Fuller, T.L., M. Gilbert, V. Margin, J. Cappelle, P. Hosseini, K.Y. Njabo, Z.A. Aziz, X. Xiao, P. Daszak, T.B. Smith. Predicting hotspots for influenza virus reassortment. Emerging Infectious Diseases 19:581-588. PDF
2013 Fuller, T.L., Thomassen H.A., Peralvo M., Buermann W., Mila B., Kieswetter C. M., Jarrin V.P., Cameron Devitt S.E., Mason E., Schweizer R.M., Schlinegger J., Chan J., Wang O., Schneider C.J., Pollinger P.J., Saatchi S., Graham C.H., Wayne R.K., Smith T.B. Intraspecific morphological and genetic variation of common species predicts ranges of threatened ones. Proceeds of the Royal Society Biological Sciences, 280, 20130423 PDF
2013 Mendoza E, Fuller T, Thomassen HA, Buermann W, Ramírez-Mejía D, Smith TB. An assessment of the effectiveness of the Mesoamerican Biological Corridor for protecting potential Baird’s tapir (Tapirus bairdii Gill, 1865) habitat in Southern Mexico. Integrative Zoology 8:35-47. PDF
2013 Smith, T.B., R. Harrigan, A. Kirsche, W. Buermann, S. Saatchi, D. Blumstein, S. de Kort, H. Slabbekoorn. Predicting birdsong from space. Evolutionary Applications. DOI: 10.1111/eva.12072. PDF
2013 Thomassen, H.A., T. Fuller, S. Asefi-Najafabady, J.A.G. Shiplacoff, P.M. Mulembakani, S.C. Johnston, N.K. Kisalu, T.K. Lutete, S. Blumberg, J.N. Fair, N.D. Wolfe, R.K. Shongo, M. LeBreton, H. Meyer, L.L. Wright, J. Muyembe, W. Buermann, E. Okitolonda, L.E. Hensley, J.O. Lloyd-Smight, T.B. Smith, A.W. Rimoin. Pathogen-host associations and predicted range shifts of human monkeypox in response to climate change in Central Africa. PLoS ONE 8(7): e66071. DOI: 10.1371/journal.pone.0066071 PDF
2011 Thomassen, H. A., T. Fuller, W. Buermann, B. Milá, C. M. Kieswetter, P. Jarrín-V., S. E. Cameron, E. Mason, R. Schweizer, J. Schlunegger, J. Chan, O. Wang, M. Peralvo, C. J. Schneider, C. H. Graham, J. P. Pollinger, S. Saatchi, R. K. Wayne, and T. B. Smith. Mapping evolutionary process: a multi-taxa approach to conservation prioritization. Evolutionary Applications 4: 397-413. PDF
2008 Smith, T. B., and G. Grether. The importance of conserving evolutionary processes. Pages 85-98. In S. P. Carroll and C. W. Fox (Eds.) Conservation Biology: Evolution in Action. Oxford University Press, Oxford.
2008 Gillespie, T. W., G.M. Foody, D. Rocchini, A.P. Giorgi, and S. Saatchi. Measuring and modelling biodiversity from space. Progress in Physical Geography 32: 203–221. PDF
2007 Smith, T. B., B. Milá, G. F. Grether, H. Slabbekoorn, I. Sepil, W. Buermann, S. Saatchi, and J. P. Pollinger. Evolutionary consequences of human disturbance in a rainforest bird species from central Africa. Molecular Ecology 17: 58-71. PDF
2006 ter Steege, H., N. C. A. Pitman, O. L. Phillips, J. Chave, D. Sabatier, A. Duque, J. Molino, M. Prevost, R. Spichiger, H. Castellanos, P. Hildebrand, and R. Vasquez. Continental-scale patterns of canopy tree composition and function across Amazonia. Nature 443: 444-447. PDF
2003 Turner, W., S. Spector, N. Gardiner, M. Fladeland, E. Sterling, and M. Steininger. Remote sensing for biodiversity science and conservation. Trends in Ecology and Evolution 18: 306-314. PDF

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